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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and the Innovative Genomics Institute.  The Science Researchers … author Lucas Harrington was a graduate student from study senior author Jennifer Doudna’s lab, and he worked …
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Frequently Asked Questions: Project Management
… Eukaryotic projects: Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA … You can visit the Products & Offerings section of our website for more details, including a downloadable pdf of products categorized by …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Joint Genome Institute, builds upon thousands of microbial …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to some of the … algae. But human-induced climate change , a new study suggests, is displacing these important cold-water … Colder waters nearer the poles, however, tend to favor eukaryotes ( microorganisms with a nucleus). These …
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Bacterial barcoding facilitates plant microbiome studies.
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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Metagenomics
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … the production of the natural product. So that was my PhD study, and then towards the end of my PhD study, then recombinant DNA technology was becoming … with Professor Ben Shen, from The Scripps Research Institute (TSRI) in Jupiter, Florida. Ben and Alison and I …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal … 99.8% Q3 2026 175     2,164     Q4 2026 175     2,208     *Includes Illumina and PacBio sequencing platforms. …
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JGI Announces 2023 Community Science Program Awardees
… Program call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … on our Twitter. Samples were collected from across a permafrost age gradient from the Fox permafrost tunnel near Fairbanks, Alaska. (Courtesy of …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal … validate how mycorrhizal fungi play an integral role in soil carbon storage. Summary There are three types of fungal … (Berkeley Lab). All of the fungal genomes used in the study are available on the JGI fungal portal  MycoCosm . The …
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A Molecular Study of Microbe Transfer between Distant Environments
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