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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the seasons. The Science … when it comes to nutrient cycling in polar regions. While microbial populations in other Antarctic lakes and the … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with the … proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … JGI users and collaborators gathered for a SIP-focused workshop at the JGI in the fall of 2024. “ We wanted to get …
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Accelerating Metagenomics Discoveries with Deep Learning
… their works-in-progress with 86 participants in an online workshop to harness deep learning for metagenomic data.  … biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector … Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew Tritt of CRD and, independently, Ying …
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Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricumtype E strains
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Eelgrass Proves to Be Much Younger Than We Thought
… to assess absolute time estimates for major colonization events. It was previously assumed, due to the wide and … closer to a mere 250,000 years — with many key colonization events in the Atlantic ocean occurring within the last … form of another species, so the scientists had to use the genome itself.   Approximately 67 million years ago, the …
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FICUS
… samples of the spatial, temporal, taxonomic (environmental, microbial, plants, invertebrate, and vertebrate), and …
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A Horizontal Gene Transfer Event Defines Two Distinct Groups within Burkholderia pseudomallei That Have Dissimilar Geographic Distributions▿ †
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of … Time-series (HOT), they collected samples of the ocean’s microbial communities periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, …
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Improving the Cacao Genome and Phytozome
… will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao … released by a Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the plant team at the  …
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Tanja Woyke
… Woyke pursued her postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her research … primary interest and passion. Dr. Woyke stepped into the Microbial Genomics Program Lead position in 2009 and assumed … Tanja Woyke is the Microbial Science Program Head as well as our Deputy of User …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to … leaves, a team of researchers sequenced  P. trifoliata ’s genome. Scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Secondary Metabolites Program
… factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …
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