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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary … in the recent Database issue of the journal Nucleic Acids Research , the Secondary Metabolism Collaboratory (SMC) has … U.S. Department of Energy Joint Genome Institute (https:// ror.org/04xm1d337), a DOE …
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Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … yet much of it remains unknown. For more than a decade, researchers around the world have collaborated with the U.S. … ( IMG/M ) portal. As part of a comparative analysis, 824 new GEBA-Actino genome sequences were combined with nearly …
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Alabama Agricultural & Mechanical University Internship Program
… 2024 was a year of firsts, including the flagship internship program between Alabama … and the Joint Genome Institute. AAMU students spent two months in Berkeley, California honing their scientific skills … Our interns say their experiences allowed them to:  Learn new skills. Experience industry-level work and coding. …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of … User Facilities, is a legally binding contract.   All User researchers must have their home/employing institution sign … address the DNA Synthesis program. When fully executed, the new User Agreement will replace the active version. For …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… to offer a window into viral existence. Along with highlighting the viruses in a given sample, metagenomics shed … database to include a dedicated section for viruses, so researchers around the world would have better, easier access to these viral genomes. The new database was called IMG/VR. It featured samples from …
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A Sorghum Pangenome Opens More Doors to Discovery
… resequenced sorghum varieties, a resource for breeders and researchers to harness the traits that let this biomass … holds keys to drought and flood resilience, biomass production for fuels, and growth in poor soils. In addition to … genetic variation more closely with gene function and find new ways to implement traits of interest in crops. …
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Four Researchers Join JGI User Executive Committee
… Four researchers have been elected to the User Executive … of Energy user facility located at Lawrence Berkeley National Laboratory. Holly Bik of the University of Georgia, … are regular participants of the JGI annual user meeting and New Lineages of Life symposia. Bik is a recipient of the …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. … The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than … mycorrhizal species. The 62 mycorrhizal species include 29 newly-sequenced mycorrhizal genomes. With so many fungal  …
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives on what the next five … nature. In the last few years, mapping the planet’s viral diversity has advanced drastically, aided by genome assembly … DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United States, and …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  … available hours. Other DOE Quarterly Metrics Q1 – Report on new computational developments for improving microbial, …
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University of California, Merced Internship Program
… Originally conceived as a UC Merced graduate student summer research … Interns say their experiences allowed them to:  Learn new skills. Experience industry-level work and coding. …
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