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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse gas 20 … a key role in determining the composition of the Earth’s atmosphere and regulating the global climate for life to … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly …
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efam: an expanded, metaproteome-supported HMM profile database of viral protein families.
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from reseachers who translate genomic information into biological function. Through our CSP Functional Genomics … are accepted year-round; the next deadline is Jan. 30, 2025. …
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JGI Scientists Pen Genome Watch Articles
… Tanja Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — and there’s … “Given the great expertise in microbial genomics and metagenomics of the microbiology-focused groups at the Joint … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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DOE JGI Metagenome Workflow
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  Phytozome . Now the portal offers a way for users to more … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists … state of things, and what we’re hoping to accomplish at JGI in this area. If this series of podcast episodes has … questions or comments, you can contact us on Twitter at  @JGI  or  @danudwary , or by email to  jgi[email protected] . …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a connected resource … with NERSC and the DOE Energy Sciences Network (ESNet), the JGI has unique access to both expertise and infrastructure …
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DOE Metrics
… DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal … target is based on 98% of the total available hours.   FY 2025 DOE Metrics There were 2,627 unique* JGI users in FY2025 , which includes Principal Investigators …
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CalTeach
… CalTeach is a program for undergraduate majors interested in developing a deep understanding of … focuses on STEM pedagogy, educational theory and promoting diversity, equity, and inclusion, with concurrent field work in local classrooms and tutoring centers. Cal Teach offers a minor in Science and Math …
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Diversity of active viral infections within the Sphagnum microbiome
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Viromics approaches for the study of viral diversity and ecology in microbiomes
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