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Assemblathon 1: A competitive assessment of de novo short read assembly methods
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… help solve energy and environmental challenges.   Usually, plants have the upper hand against any kind of biomass … years evolving tactics against potential threats. “Because plants can’t run away, they’ve evolved these really tough … engineer at the University of California Santa Barbara. So plants don’t break down without a fight, but it’s an …
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Filling in the Plant Tree of Life
What if we understood plants and how they adapt to their ever-changing … food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. …
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JGI@25: Strengthening Soybean
… and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … completed by the JGI. It has since been cited more than 5,400 times, including a number of projects that point to the … soybean genome sequence and ASR in this JGIota, a Genome Insider podcast minisode.)  In 2016, the JGI accepted a …
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The Case for Conservation
… moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the … and at HudsonAlpha. As the team discussed in a JGI podcast episode about the work, the effort to fully sequence the … of satisfaction. … This work was supported by NSF DEB-1541005 and start-up funds from UF to S.F.M.; microMORPH …
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CSP New Investigator Call
… and track record of the applicant.  Learn about the general review process or get details on the … Pennacchio, Project Management Office. For questions about the appropriateness of projects or experimental …
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Jeremy Schmutz
Mr. Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when he was working for … Plant Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and … IL … Healey, A.L., Garsmeur, O., Lovell, J.T. et al.  2024.The complex polyploid genome architecture of sugarcane. …
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Dispatches From JGI Interns
… real, impactful research projects with JGI mentors. In this episode, hear two interns from the 2021 cohort describe … their deep dives into genomics, computational tools, and big data.  …
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FICUS
… the spatial, temporal, taxonomic (environmental, microbial, plants, invertebrate, and vertebrate), and thematic scope of … Pennacchio, Project Management Office. For questions about the appropriateness of projects or experimental …
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Data Policy & Support
… … Read more about our data management practices and the resources we …
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JGI@25: The Little Alga That Could
… of those shared by both humans and flowering plants). Its genome also contains hundreds of genes uniquely associated … (Hear more from on Chlamy from Sabeeha Merchant in this episode of JGIotas, a Genome Insider podcast minisode.) Since the JGI’s early sequencing …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … detected.” Developing Approaches for Reconciling “Real” Big Data For the team, the computational work that led to … the RNA virome However, this is now real Big Data, we are dealing with billions of sequences, and soon, with …
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