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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant roots. Plants provide photosynthesized carbon, while … with previous studies in the same system. With the right functional characterization, those genes could become dials …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… their expertise in developing and managing public viral genomics resources such as analytical tools and data … “ Advanced analytics for uncovering virus dynamics and functional potential ," is among the five focused on tool … the goal of this work is to develop tools, curated databases, and streamlined workflows that allow researchers …
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Four Researchers Join JGI User Executive Committee
… State University, Jonathan Eisen of the University of California, Davis, and Michael Köpke of Lanzatech are the latest … His current research focuses on the evolution, ecology, genomics and function of microbes and microbiomes, … community and consider new initiatives in areas such as functional studies (e.g., a functional encyclopedia building …
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Publication Policy
… research project are appropriately recognized and credited for their work, while also adhering to the authorship … and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts to do so, and JGI expects …
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Nikos Kyrpides
… Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial … National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome Data …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… fungal mitochondrial genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers … sequences previously unrecognized within existing public databases and recovered more than 3,000 others from …
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An Insect Herbivore Microbiome with High Plant Biomass-Degrading Capacity
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Bioinformatics Analysis Tools for Studying Microbiomes at the DOE Joint Genome Institute
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from reseachers who translate genomic …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint … the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab … also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department …
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Taking Stock of the Known and Unknown Microbial Space
… the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … said co-first author Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data … JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) database. In their analysis, the team found that bacterial …
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Game On: High School Students Drive Everglades Metagenomics Study
… out to many researchers with the hope of getting support for a research project for his class of 18 juniors.  He got … training for the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) portal for their sample analysis.  The … a deeper understanding of both the research process and metagenomics while legitimately contributing to the body of …
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