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Computationally Classifying Fungal Lifestyles
… genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … genome data from newly sequenced genomes, they also built a high-quality phylogenetic tree for  Dothideomycetes . The … and also provides more information about speciation events. … The work conducted by the U.S. Department of …
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Biotech Partners
Biotech Partners provides integrated and high-touch programs that empower underrepresented high school … They encourage students to pursue personal, academic, and professional development experiences through in-classroom …
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User Support
The JGI Project Management Office carries out a number of activities to facilitate world-class science. DOE JGI Project Managers collaborate with users to develop …
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University of California, Merced Internship Program
… graduate student summer research experience at the JGI, the Genomics Internship Program soon expanded to include undergraduate students. To date, more than 80 UC Merced students have contributed to the research of numerous JGI scientists. Interns say their experiences …
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Disclaimer
… resides on a computer system funded by the U.S. Department of Energy. Anyone using this system consents to monitoring of this use by system or security personnel. … … by trade name, trademark, manufacturer, or otherwise, does not necessarily constitute or imply its endorsement, …
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Obtaining Comparative Genomic Data with the VISTA Family of Computational Tools
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Kjiersten Fagnan
… closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in … and Opioid Addiction,” SC18: International Conference for High Performance Computing, Networking, Storage and Analysis, …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications The planet’s microbial diversity is immense, … MAGs from environmental sequence fragments can lead to high-quality yet incomplete genome sequences which could …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
Though visible to the naked eye, microscopy reveals unexpected complexity … the slightly murky waters in the tube look like a scoop of stormwater, complete with leaves, debris, and even … these giant cells in three dimensions and at relatively high magnification. Using various microscopy techniques, …
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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … have now developed CheckV (pronounced “Check-Vee”) to help researchers assess and improve the quality of … from metagenomes is challenging and often results in highly fragmented data, which limits the ability of …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest … growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … with the JGI Plant Annotation pipeline, which provides high quality comparisons of these genomes within themselves …
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