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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell … biology experiments. A recent special issue of the journal Synthetic Biology puts the spotlight on JGI’s DNA … fostering academia-industry collaborations.” A third story from the issue — Machine learning-based prediction of …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… photosynthesizing organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for … isolating the algal communities on filters, they sequenced DNA ‘marker’ gene sequences to identify the microbes. And in … genes the algae were expressing, the team sequenced their RNA transcripts. All sequencing was done through the JGI …
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Methodology for Extracting High-Molecular-Weight DNA from Field Collections of Macrofungi
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Identifying the Microbial Cleanup Crew at a Superfund Site
… found its way into the groundwater of several communities in New Mexico via leakage from a local dry-cleaner. Researchers  identified two … samples from wells at the site in 2007, 2009, and 2010. DNA was extracted from the samples that were sequenced by … of General Medical Sciences (NIGMS) (8 P20 GM103451-12) from the National Institutes of Health (NIH).  …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… surface of plants, is a comparatively understudied area of forest ecosystems as past studies have mainly focused on … both local conditions and the movement of microbes through forest canopies.  The Impact This work, enabled in part by … taxonomic makeup and functional potential of needle-surface communities.  Part of the work was done through a summer …
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An Improved Method of RNA Isolation from Loblolly Pine (P. taeda L.) and Other Conifer Species
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Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus
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Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome
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Dataset of 143 metagenome-assembled genomes from the Arctic and Atlantic Oceans, including 21 for eukaryotic organisms
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Metagenomes from Arctic Soil Microbial Communities from the Barrow Environmental Observatory, Utqiaġvik, AK, USA
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Natural Prodcast Episode 14: Nigel Mouncey
… lot going on, so I took a little break, but I’m hoping that from here I can get back to a regular schedule. I’m going to … our work in sequencing and genome mining with using DNA synthesis to express clusters metabolomics to be able to … last, what is it now, five years, working through two journal contracts for the Journal of Industrial Microbiology …
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Genetic Transfer in Action: Uncovering DNA Flow in an Extremophilic Microbial Community
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