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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… hydroxyapatite, a high-value biomaterial with a wide range of industrial applications. The team was led by researchers at two U.S. Department of Energy national user facilities – the DOE Joint … JGI user community to participate in the development and biotechnology applications of various biomaterials. These …
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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … an elephant for the first time. Based on the single body part each blind man touches – a tusk, the ear, or the tail – … to over 2.4 million viral genomes available in the latest release of IMG/VR . CheckV is freely available for download …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of invited … 2021 VEGA talk ). A global authority on viruses, Holmes was part of  the initial release the genome sequence for SARS-CoV-2 , back in January …
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Webinar: MycoCosm Tutorial
… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … enter ‘Mucorales’ in the search box, you will see only that part of the tree  (see full answer on video) 4.  Q: Will it … of these. Reach out to us if you’re interested in participating in this type of initiative.  (See video for a …
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Matt Blow
… Nottingham University, UK PhD in Genomics, University of Cambridge, UK Postdoctoral training Wellcome Trust Sanger … 1499-1505 Shulse et al. 2019. Engineered Root Bacteria Release Plant-Available Phosphate from Phytate. Appl Environ … Price et al 2018. Mutant phenotypes for thousands of bacterial genes of unknown function. Nature 557:503-509. …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with cell signaling networks that … role in regulating microbial cellulose production and biofilm formation, which affects a number of environments, … high signal intensity for imaging. The work was enabled in part by a proposal to the DNA Synthesis CSP call , and the …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … around the world have collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE … diversity. The article adds to the compendium generated as part of Genomic Encyclopedia of Bacteria and Archaea …
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Refining the Process of Identifying Algae Biotechnology Candidates
… well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these … a screening and characterization pipeline. The Impact Part of the Department of Energy’s work toward developing a clean energy … by the Bioenergy Technology Office (BETO) within the Department of Energy’s Office of Energy Efficiency and …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to … data processing. The JGI has sought to balance its  Data Release and Utilization Policies with the DOE mandate to … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired … the requirements and responsibilities of being part of a research institute. It has also introduced me to a … future, I plan to pursue this path and hopefully will be part of such a highly motivating and collaborative research …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… Ancient  Chloroflexota s ditched their flagella and other traits when … to break down pollutants and recycle carbon. They were part of an ancient lineage of bacteria to migrate from … genome and metagenomic sequencing conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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JGI-KBase Panel at SACNAS
… Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific … for any scientific contribution they make, whether as part of a course or internship, and before ever publishing a … will highlight opportunities for students through the Department of Energy-funded National Labs, User Facilities and …
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