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Jeremy Schmutz
… eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 years, Mr. Schmutz has directed … Institute and the collaborative projects funded through the CSP program. In addition to continuing to develop strategies … kingdom. Nucleic Acids Res . 51, 1–24.Lovell, JT et al. 2021. Genomic mechanisms of climate adaptation in polyploid …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
Systems group. The award ceremony was held January 19, 2021. Learn more here in the Berkeley Lab story.   …
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A One-Stop Shop for Analyzing Algal Genomes
… allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … scientists and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
…   On November 3, 2021, the JGI and the Workforce Development & Education …
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JGI on the 2020 Highly Cited Researchers List
… to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples around the … and already available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Nikos Kyrpides and  … and improve the quality of metagenome-assembled viral genomes. The paper appeared in  Nature Biotechnology . Igor …
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Model Fern Reveals Insight into DNA Thievery in Ferns
Open Green Genomes hits milestone with C. richardii The Science Fern … to S.C.); the Key R&D Program of Zhejiang Province (grant 2021C02009 to S.X.) and Zhejiang Provincial Natural Science … to D.X.).the Australian Research Council (grants FT210100366, DE1401011143 to Z.-H.C.); the Horticulture …
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Tanja Woyke
… and assumed the Deputy Director of User Program position in 2021. In addition to her JGI appointment, she also holds an … 35, 725-731. Mukherjee et al. 2017. 1,003 reference genomes of bacterial and archaeal isolates expand coverage … chemoautotrophic symbiont genome. Science 315, 998-1000. Woyke et al. 2006. Symbiosis insights through …
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2024 Progress Report
The organisms on our planet encode these functions in their genomes, and the JGI is uniquely positioned to combine … algorithms to identify billions of protein sequences in metagenomes.  We continue to engage with our user community …
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Trent Northen
Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … products. Proceedings of the National Academy of Sciences. 2021 May 4;118(18). https://doi.org/10.1073/pnas.2019855118 … (AAAS), 2022&2023 Biosciences Inventor of the Year 2019 R&D100 Award 2016 Berkeley Lab Director Exceptional Achievement …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… she has continued to contribute across JGI plant genomes. She has appeared on the annual Highly Cited … publications that Grimwood contributed to include: A 2021 Nature paper announcing a high-quality reference … the first time. A 2020 Nature Genetics paper describing the genomes of the five major cotton lineages. Grimwood was also …
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … work was partly enabled by a JGI Community Science Program (CSP) proposal led by INRAE’s Francis Martin that contributed … toward filling gaps on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled …
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Finding the Fermenters
… browser that allows other researchers to study the genomes and predict the metabolic abilities of these … GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. They also … more than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible …
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