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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics … and track record of the applicant.  Learn about the general review process or find details on the … Pennacchio, Project Management Office. For questions about the appropriateness of projects or experimental …
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CSP Large Scale Call
The Community Science Program Large Scale Call is focused on genomic science projects that address sustainable … and track record of the applicant.  Learn about the general review process or get details on the … Pennacchio, Project Management Office. For questions about the appropriateness of projects or experimental …
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JGI Advisory Committees Code of Conduct
Guiding Principles All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) … mission, we recognize success is dependent on earning the trust of our stakeholders. These stakeholders range from … Coordinate messaging with the JLT, when speaking publicly about JGI or on behalf of the JGI. We stand stronger in …
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Metabolomics
… profiles from diverse biological and environmental samples using advanced liquid chromatography mass spectrometry … soil, lake).  A wide range of metabolites are identified using LC-MS/MS methods optimized for specific types of … and our methodology for metabolite analyses.  … Read more about our submission guidelines, what you can expect from …
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A Plant Root Atlas for Tracking Developmental Trajectories
… single root cells and combining the information with previously published datasets. The work was  recently published in … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … these efforts, which included two  workshops with resulting reports and a  perspective article . Publication: Shahan R …
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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Science Programs
The JGI’s Science Programs offer support to users and their research efforts.  JGI scientists lend their expertise to enhance the scientific impact of user projects, develop cutting edge approaches for and with … with the JGI on their research. Click below to learn more about our individual Science Programs.  … Deputy of Science …
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JGI Launches Latest Strategic Plan
… sequence to the public data repositories over its now 20-plus-year history. In 2019, the countdown has begun to the … prospective partners to generate awareness of and clarity about the JGI’s strategic directions,” said Mouncey. “In … through it, provide us feedback and to help us calibrate progress toward our near- and long-term goals. And, by the …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) … Program, and coordinates the development of the virus and plasmid workflows for the National Microbiome Data … and functionally explore viral genetic diversity.  In 2021, he was among those selected by the DOE Office of …
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Nigel Mouncey
… of managerial experience from almost 20 years in the Industrial Biotechnology private sector, as well as research … head as well as our JGI Director. Click to learn more about the program's areas of focus, major initiatives and … Reference Genomes. Cell Genomics 2: 100213Nayfach S et al. 2021. A genomic catalog of Earth’s microbiomes. Nat …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … noted this may be the first publicly available, river-focused microbial resource that provides information at … health diagnostic systems to monitor for and identify land use or water quality changes. Summary Rivers are key …
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Tanja Woyke
… which she deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position … and assumed the Deputy Director of User Program position in 2021. In addition to her JGI appointment, she also holds an … as well as our Deputy of User Programs. Click to learn more about the program's areas of focus, major initiatives and …
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