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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … methods for reacting subsurface flows, and evolved into scalable methods for scientific data analysis. In 2014 … the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head.  Dr. Fagnan is also …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences site. Lawrence Berkeley National Laboratory … Computing Center (NERSC), the DOE Joint Genome Institute (JGI), and the Energy Sciences Network (ESnet) have been … results this year by assembling a collection of large datasets that will enable scientists to explore and collect …
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JGI Launches Latest Strategic Plan
… of the Integrative Genomics Building—the new home of the JGI and KBase in the heart of the Lab’s 200-acre campus—with … — A Vision for Integrative and Collaborative Genome Science , the culmination of an eight-month intensive … for those who are already familiar with the research portfolio that the JGI supports, include JGI’s emerging …
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Axel Visel
… the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max … University of California, Merced. Dr. Visel also served as JGI Interim Director from March 2016 – March 2017.   …
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Fungal & Algal Program
… This research helps translate their genomic potential into practical applications, including sustainable biofuels, … plant biomass production as well as converting biomass into bioenergy and bioproducts. The program’s fungal … genomes to support both basic research and applied science. By advancing fungal and algal genomics, the program …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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JGI & KBase at PAG XXVII
… Calif. Representatives from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology Knowledgebase (KBase) will … representatives from KBase and the JGI about collaborative science opportunities. Learn how to apply for a project with … Bioinformatic Approach to Discovering Promoters Regulating Poplar Drought Response 7:27 PM Highlights from Genome of …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … is protective, a bit like diversifying an investment portfolio. If a stress like wildfire or drought threatens … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
…   The JGI is excited to announce the 18 scientists selected for our 2025 Community Science Program Annual Call. These projects include cutting-edge research into microbial communities — from freshwater estuaries …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal … potential for AI-driven studies of energy metabolism. The Science Researchers produced nearly 10,000 new annotations … that some of these genes have moved from the mitochondria into the nuclear genome over evolutionary time. They also …
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Opening doors to physical sample tracking and attribution in Earth and environmental sciences
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Natural Prodcast Episode 2: The Primer, Part 2
… Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi, … basic ideas of the science of natural products, and we dive into the very early history of the field. If you continue … have that goal. That’s not as much our goal here at the JGI – we are not a medicinally focused organization. And so, …
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