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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To better … with the fungi and bacteria, while the DOE JGI team sequenced and annotated a host genome (Rm ATCC 52813) as … This research was supported by the National Science Foundation and the National Institutes of …
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Finding the Fermenters
… prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with little or no oxygen, life had found other ways to produce energy, using a process called fermentation. To better understand the range of bacteria and archaea …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting researchers to … the researchers will receive a FedEx package with the sequenced, quality controlled population representing the … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, … of Science user facility located at Lawrence Berkeley National Laboratory, have collaborated with global researchers … collection of UViGs by identifying contiguous viral sequences (“contigs”) from thousands of ecologically diverse …
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JGI Welcomes New UEC Members
… (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their … as well as proposal review procedures and the organization of the JGI Annual Meeting. Any investigator who has been …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… hitchhikers. These organisms are abundant and yet exceptionally small, with mini genomes to match. As a result, they … to survive. To fill in their nutrient gaps, they must latch onto a larger host — often, a fellow archaeal microbe. … hitchhikers coexist is key for understanding their impact on wider ecosystems, but these symbiotic interactions are …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint … summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of them has brought invaluable insights, thoughts, and explorations that has led to groundbreaking science and opportunities …
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The Busy World of Deep Sea Eruptions
… The ocean depths are vast and dark. But there are hotspots on the ocean floor — underwater volcanoes and hydrothermal … and understanding how they’ve adapted to this extreme environment.   …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … A collaborative team led by Joey Spatafora at Oregon State University, Jason Stajich at the University of … of binning methods, we were able to recover Olpidium sequences from the “contaminated” genome data with strong …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, researchers … gaseous organic sulfur compounds in the atmosphere.  Beyond bacteria, this enzymatic machinery has potential as an … isolate it. The JGI provided a range of constructs based on sequences for MAR enzymes from different organisms to …
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Fungus Fuels Tree Growth
… Researchers start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual lifestyle; it can thrive in the soil as … in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team found that, …
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Tracing the Evolution of Shiitake Mushrooms
… genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  new … mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. … genetic diversity in wild Lentinula species compared with farmed cultivars, highlighting a potential conservation …
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