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You Can Move, But You Can’t Hide
… Researchers at the JGI develop a tool to quickly and accurately identify mobile genetic elements like … Science Mobile genetic elements (MGEs) are genetic entities that seek to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found …
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IMG/VR
… JGI's Simon Roux describes the structure and content of the IMG/VR v3 … how to leverage novel capabilities of IMG/VR to browse and search through the more than 2 million viral sequences …
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Simon Roux
… research as part of the Metagenome Program. His responsibilities include the development of novel computational … viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts in the … B.S. in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. … by generating two complete genomes from varieties that diverged over a million years ago. The hallii variety thrives in desert … no. DE-AC02-05CH11231. The UT Brackenridge Field Lab and the Ladybird Johnson Wildflower Center provided support …
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How to Target a Microbial Needle within a Community Haystack
… make-up of specific uncultivated microbes from complex environmental samples. The Science A team led by researchers at the Max Planck Institute (MPI) for Marine Microbiology has developed, … and single-cell genomics, the vast majority of microbes that play key roles in global biogeochemical cycles remains …
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Access to Rock Star Scientists
… the JGI-UC Merced Genomics Internship, graduate students Candace Cole, Mo Kaze, Akshay Paropkari, Vicente Ramirez and Rhondene Wint had summer 2018 internships in Walnut Creek. The … is so nice and willing to help. The second is the training that I am receiving. The mentorship I am receiving at JGI is …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets with the assembler …
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JGIota: Looking Back at Methane-Making Microbes
… We count on livestock for food and fiber, but raising these animals … studying those microbial methane-makers. Eventually, that could help us dial back their emissions, while still …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for … metadata repository, making curated microbiome metadata that follows community standards freely available, and enabling large-scale … U.S. Department of Energy operated [DE-AC02-05CH11231]; National Energy Research Scientific Computing Center, which is …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. While … on cone snails, UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship … started, and overall found informatics to be intimidating. That first exposure from great interactions with Dr. Ben …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and biogeochemical cycles…. Viruses play a pretty important … recently published paper with first author Amundson in the journal Microbiome . The work builds off a proposal approved …
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Six join FICUS program in 2026
… to welcome six to the Facilities Integrating Collaborations for User Facilities (FICUS) program for fiscal year … with the Environmental Molecular Sciences Laboratory (EMSL) and other national user facilities. Focus areas for these … molecular techniques. The FICUS program is designed to encourage and enable researchers to more easily integrate the …
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