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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett Baker’s lab at the … Program (CSP) proposal, and Rambo’s research builds on that. “The purpose of this CSP is to better understand … his dissertation, he noted his time with the JGI has shaped his post-graduate school plans. “The SCGSR gave me …
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A Plantiful Future: Xiaohan Yang
… Can plants help humans attain a renewable energy future? Can they help lock away more carbon? Xiaohan Yang, a scientist at Oak Ridge National Laboratory, believes they can. And, what’s more, that using gene editing technology to conscientiously mix …
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Soil virus offers insight into maintaining microorganisms
… researchers have identified a protein in soil viruses that may promote soil health. The work was enabled in part … Lab). Using 5,000 images of crystalized samples cloned and synthesized by the JGI, scientists have begun the … IMG suite, JGI retrieved 142 of the GH75 AMGs, which encode enzymes that break down chitin. A protein tree was then …
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JGI Welcomes New UEC Members
… Executive Committee (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their access to technical capabilities …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding … in Antarctic lakes, some of which have salinities 10 times that of seawater. To shed light on the global biogeography … global biogeochemical cycles, and possibly cold-temperature enzymes for biotechnological use. Summary Conditions such as …
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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead PI on any previously … peer-reviewed for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and …
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic information into biological function.  The … peer-reviewed for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and …
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A Natural Mechanism Can Turbocharge Viral Evolution
… Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The … Two decades ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity … Foundation’s XSEDE computing resource (award DEB170007), and through a Challenge Grant from the California …
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Statement on the Use of Genomics Data
… (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through open access to … Inspired by the Human Genome Project (HGP), and building upon the principles for open access in the field of genomics … its user community to NCBI as well as to the  data portals that the JGI manages, immediately after data processing. The …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… This is excerpted from the full announcement “ Berkeley Lab Receives Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences site. Lawrence … the release of MetaHipMer, an end-to-end genome assembler that supports “an unprecedented assembly of environmental …
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The fungus that made itself at home
… Retracing how the dry rot Serpula lacrymans adapted to a new ecological habitat. The Science By comparing genetic information from similar organisms, researchers have gained insights … third fungal Serpula species, S. himantioides from Europe, that was sequenced and analyzed by the JGI. The researchers …
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Virus Discoveries that Keep Getting Bigger
… to single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, in environments all over the world, scientists have discovered … a microeukaryote, forms large algal blooms in the ocean that cycle environmental carbon and sulfur. A giant virus, …
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