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JGI Announces 2023 Community Science Program Awardees
… Congratulations to the proposers of the 19 proposals selected for the 2023 Community Science Program call of the U.S. Department of Energy (DOE) Joint Genome … plant and algal functional genomics, inter-organismal interactions, understanding natural communities important …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… for the global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released … but it also requires a deep understanding of biological systems. The JGI strategic plan lays out how users and the … insights into a vast range of organisms and ecosystems. These kinds of data could open opportunities along …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint … Internship co-founder Axel Visel and UC Merced Quantitative Systems Biology professor Carolin Frank reflected on the … and a teaching assistant for the UC Merced Quantitative and Systems Biology department.   Jonelle Basso , a JGI research …
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Special Initiatives & Programs
… ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If “BERSS” is … for BERSS support through the JGI (with the exceptions of DE-FOA-0003453 and DE-FOA-0003615 , which are both … performs sequencing, metabolomics and synthesis on behalf of the U.S. Department of Energy Bioenergy Research …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … a combination of really cutting-edge genomics and genetic analysis with large scale data collection,” he added. Jeremy … across the chromosomes. “In the past, we needed model systems to test genetic hypotheses in species with large and …
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Training the Next Generation of Talent
… DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy … as a first-year graduate student in the Quantitative Systems Biology (QSB) Group under the School of Natural … on the genetic mechanisms of chemotaxis in the Arabidopsis microbiome, particularly, how bacteria can be driven toward …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … pressure on retaining the flagellum in the terrestrial ecosystems. Unfortunately, neither paper was able to resolve … question, despite of their well-designed sampling and analysis of their data at the time. Following the …
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Dan Rokhsar
… efforts directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … have applied and refined in the sequencing and evolutionary analysis of over fifty plant and animal genomes. He …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through open access to resources and promoting … when these records will be made available again within NCBI systems. In addition, the JGI issued a Request for …
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Improving the Cacao Genome and Phytozome
… fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest buyers of cocoa, is collaborating with others to develop healthier … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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A Community Resource for Secondary Metabolite Researchers
… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … come pre-annotated using multiple commonly used sequence analysis tools is a means of expediting BGC and biosynthesis … portal within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as IMG-ABC. That portal …
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … , they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. … from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis is one of …
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