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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. … found informatics to be intimidating. That first exposure from great interactions with Dr. Ben Cole and Dr. Axel Visel …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… More than 20 UC Merced students have contributed to the research of … California (UC), Merced assistant professor Suzanne Sindi from the School of Natural Sciences and started a program … Arroyo lauded the partnership. Sindi also shared a message from Betsy Dumont , Dean of the UC Merced School of Natural …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford Human … strategies for de novo sequencing of eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the … Jeremy Schmutz is the Plant Science Program Head at the JGI. Click to learn more …
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Party in the Rhizosphere
… There’s a party in the soil, and microbes are the VIPs. They’re feasting on the compounds …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an … recently compiled a list of with more than 8,300 organisms from multiple sources, including the U.S. Department of … ruminant guts, sediments, and anaerobic bioreactors. Aside from producing energy that the organisms can use to thrive, …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Accepted proposals emphasize JGI interests in algae and … Laboratory (Berkeley Lab). The accepted proposals come from 80 full proposals, resulting from 95 letters of intent. For the first time, 63 percent of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring … to examine microbial chemical production. The Science Soil bacteria in the genus Streptomyces are nature's chemical … a template — integrative analysis of multiple omics data from various environments — that JGI users can leverage to …
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Nandita Nath
… Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing libraries from minimal DNA input without amplification. …
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The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force
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Fishing for Novel Cellulose Degraders
… A “bait and hook” single-cell genomic approach to … When they tested the screen method on a microbial community from geothermal hot springs, they uncovered a novel … then applied it to environmental samples from the Great Boiling Spring Geothermal Field in Nevada. To validate the …
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them … All proposals will be externally peer-reviewed for scientific merit, DOE mission … Proposers are encouraged to review the JGI’s sample requirements . …
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Three Join the JGI User Executive Committee
… Committee (UEC) recently welcomed three new members earlier this month – Sneha Couvilion of Pacific Northwest … is a staff scientist at PNNL and thrust lead on PNNL’s Soil Microbiome SFA. She serves as Secretary within the … and help develop programs to increase participation from minority-serving institutions in JGI user programs. The …
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