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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal … through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  Dothideomycetes …
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Nigel Mouncey
Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its 27-year history. He has a wealth of managerial experience from almost 20 years in …
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A Complex Confection Decoded: Sugarcane Reference Genome
Sugarcane was the last major crop without a reference quality genome … Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in …
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10 From JGI on the 2019 Highly Cited Researchers List
Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, … Nature Genetics, the work is part of a long-term project to sequence, annotate and analyze the genomes of more than 300 …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
As warm-adapted microbes edge polewards, they’d oust … than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem … After isolating the algal communities on filters, they sequenced DNA ‘marker’ gene sequences to identify the …
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JGI Workshop at SIMB NP Meeting
Jan. 7: New Capabilities to Study Secondary Metabolism   … expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE …
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Uri Neri
Uri Neri is a computational biologist who spends his days wrangling viral … messenger RNA", and that somewhere in the mess of genetic sequences lurks the next cool virus – if only our code would …
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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) initiative was established …
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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that … increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By … they were able to identify 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  …
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FICUS
The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
Though visible to the naked eye, microscopy reveals unexpected complexity At first … on marine mangrove systems, and he was looking for sulfur-oxidizing symbionts in sulfur-rich mangrove sediments not … the bacterial cells on the molecular level. They amplified, sequenced and assembled the genomes. In parallel, Gros’ lab …
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Triggering Morel Fruiting
A collaborative team led by Hao Tan from the Sichuan Academy … M. importuna CCBAS932 from the forests of France, were sequenced and annotated by a collaborative team. The genome sequences and annotations are available on JGI’s fungal …
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