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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part … development of novel computational tools to identify virus sequences, the design of new experimental approaches to link … B.S. in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université …
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Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome
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Triggering Morel Fruiting
… Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis Martin from the Institut … part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In … M. importuna CCBAS932 from the forests of France, were sequenced and annotated by a collaborative team. The genome …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing alga into a powerful platform for developing ​​bio-based industrial … genome assembly, researchers offer a gapless end-to-end sequence of complete chromosomes. Auxenochlorella solves a … Research program under award no. DE-SC0023027 (to SSM and JLM) with support from the Gordon and Betty Moore …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a … using advanced technologies to reconstruct the complete sequences of individual chromosomes. The team describes the … The bioinformatics work conducted at the University of Pretoria was supported by the University of Connecticut (UConn) …
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI … head Emiley Eloe-Fadrosh outline more targeted approaches to reconstruct individual microbes in an environmental … recent Nature Communications paper, uncovering giant virus sequences in soil for the first time. A second approach …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of … 1. Q(uestion): How much DNA is required for the JGI SIP metagenomics pipeline? A(nswer):  The more the better. We want … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids … said John Vogel, head of the Plant Functional Genomics program at the JGI and a senior author on the …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 … of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis
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Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032
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Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica
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