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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
As SIP experiments shed more light on microbial communities than ever before — especially … a  Minimum Information for any Stable Isotope Probing Sequence (MISIP) . They differentiate between required …
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his … and lignocellulose degradation encoded in the genome sequence of  Schizophyllum commune . Nat Biotech.  2010; 28: …
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New Research Sheds Light on Diversity in the Deep Sea
Microbial communities living near hydrothermal deep-sea vents … In doing so, they found a high degree of variability in the types of microorganisms that inhabit these sites, as well as … cycling. However, the high degree of variability in what types of microorganisms were found at each site and the role …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Ian Blaby
Since 2019 Dr. Blaby heads the DNA synthesis platform at the … with a view to developing a deeper understanding of sequence-based gene function. … B.Sc. (HONS) – University of … et. al., Genome‐wide analysis on Chlamydomonas reinhardtii reveals the impact of hydrogen peroxide on protein stress …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are … conventional food crops. For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be … diseases are well known to be partially due to the DNA sequence that makes up an individual’s genome. The genes of …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a … domesticate some 60 strains, inserting into them a genetic sequence that acts as a “landing pad.” Mouncey adds, “Once … have a landing pad in a strain, you can deliver multiple types of payloads, such as individual genes, whole pathways, …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm … the process hinges on referencing to existing genome sequences.  Some of these proteins are what the scientists … artificial intelligence to decode the language of protein sequences and obtain hints of their possible functions. Yet …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate … the cellular level — really understand how those two cell types [of two different organisms] are interacting with each … RNA sequencing, the researchers identified different cell types within  M. truncatula root cells, and profiled their …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate … the cellular level — really understand how those two cell types [of two different organisms] are interacting with each … RNA sequencing, the researchers identified different cell types within  M. truncatula root cells, and profiled their …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is … species, as well as modifying this method to study other types of problems surrounding differential distribution of …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
P. psychrophila genes drive resilience when salinity fluctuates. The Science The … determine how life thrives in the Arctic, and how different types of microbes form communities. As temperatures …
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