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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
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Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
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Complete Genome Sequence of Micromonospora Strain L5, a Potential Plant-Growth-Regulating Actinomycete, Originally Isolated from Casuarina equisetifolia Root Nodules
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Transposon Mutagenesis Paired with Deep Sequencing of Caulobacter crescentus under Uranium Stress Reveals Genes Essential for Detoxification and Stress Tolerance
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… 80 full proposals, resulting from 95 letters of intent. For the first time, 63 percent of the accepted proposals … (KBase) , a free, open source data science platform that allows users to explore data and share … Wisconsin Institute for Discovery (WID) are interested in sequencing secondary metabolite-producing environmental …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the … 25-plus years since the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and organisms than ever before. In 2006, the JGI produced 33 billion base pairs of … address some of the most pressing challenges of our time. For more information, please visit  …
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar … molecular features to large ecosystem-level processes for the first time. By collecting data from 27 different … generated is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization were provided by …
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Steven Wilson
… Systems Engineering Group lead.   The group is responsible for developing and supporting applications that span the … Mr. Wilson joined the JGI in 2002.  A fter supporting the sequencing core at Exelixis Biopharmaceuticals as an intern, … added structure and process to the group by developing SOPs for instrument maintenance and operation.   Pursuing an …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in … to study both sides of this interaction up close, using RNA sequencing to understand gene expression: one of the first … studies to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Now, with improvements to DNA Affinity Purification Sequencing (DAP-seq), these barriers are falling. As  … advancement holds the potential to expand opportunities for bioenergy and bioengineering applications. “We worked … TFs and fragmented genomic DNA, eliminating the need for living cells. This allowed researchers to map regulatory …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… reductase system, researchers could open avenues for using bacteria to produce ethylene and more.  Microbes … abundant miscellanea of their surroundings. Case in point: for us, the smell of the ocean simply signals we’re near the … done the synthesis, metagenome mining, all the way from sequencing to functional characterization, and a project …
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