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… in our new Strategic Plan , which was released in April 2024 — through serving an increased number of users with a … 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 Megabases of DNA We processed … culminated in a reference for the complex  sugarcane genome sequence. The JGI  partnered  with synchrotron user …

Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which … three strains of  Zygnema circumcarinatum . Published  May 2024 in  Nature Genetics by an international research … plant resilience and productivity. The algal genomes sequences are available on the JGI’s  PhycoCosm portal. … …

… researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … domesticate some 60 strains, inserting into them a genetic sequence that acts as a “landing pad.” Mouncey adds, “Once …

… metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic … collection of UViGs by identifying contiguous viral sequences (“contigs”) from thousands of ecologically diverse …

Their partnership is widespread and cosmopolitan: more than 20,000 ascomycete species and hundreds of microalgae are … nitrocellulose filters in Petri dishes. The scientists also sequenced the fungus and photobiont’s genomes and compared … … This work was supported by an intramural seed grant (IGSP 2008001) to DA, FL, and FD from the Duke Institute of …

Amplification to generate enough DNA to put on a sequencer. As previously mentioned, it’s a method that’s … assembly. So while researchers are confident all the DNA sequences came from one cell, including components like plasmids, the picture is far from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital …

… mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein Bendall and … and the fact that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for me … it’s great to see how far the field has come from the early 2000s. Josue Duque : One of the best parts about interning …

… program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established … Biological and Environmental Research (BER) grants DE-SC0023084, DE-SC0021350, and DE-AC02-05CH11231. Partial support by US National …

… her thoughts about the experience below. In the summer of 2018, Jonathan Benskin was preparing to teach a second year … samples to the JGI for sequencing.  While JGI processed, sequenced, and analyzed the soil samples, the JGI offered 7 … and Proteobacteria to be the most common phyla of bacteria sequenced from the metagenomic soil samples from the four …

… one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s … one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s vigilant stewardship as JGI’s …

In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is … clearly identifies the four subgenomes based on non-genic sequences.”  In his words, the history of the strawberry is …