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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… bioproducts. This study offers a template — integrative analysis of multiple omics data from various environments — that JGI users can leverage … or related microbes can work with the JGI to apply the same integrated approach to unlock useful chemistry in their …
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Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis
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Genome Sequence of Hybrid Vibrio cholerae O1 MJ-1236, B-33, and CIRS101 and Comparative Genomics with V. cholerae▿
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A comparative genomics screen identifies a Sinorhizobium meliloti 1021 sodM-like gene strongly expressed within host plant nodules
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Horizontal gene transfer in Histophilus somni and its role in the evolution of pathogenic strain 2336, as determined by comparative genomic analyses
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UC Merced Interns Reflect on Their JGI Summer Projects
… worked on ranged far and wide — from implementing new data visualization tools, to using natural language … summer. The JGI-UC Merced internship program was founded in 2014 with the goal of inspiring students to embark on a … the short videos highlighting the exciting work done by the 2020 cohort of JGI-UC Merced interns .   by: Ashleigh Papp …
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Charting Progress toward Professional Goals
… invaluable scientific and technical experiences.  Genomic data scientist Deanna Beatty sat down with interns hosted at … this. Although my interest was always laid in sort of, in analysis. So sort of more computational generally. But yeah, … like a lot of fields would like to have more data science integrated into them, especially with, like, this rise of, …
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iPHoP: A Matchmaker for Phages and their Hosts
… more of these viruses than ever before, in all kinds of ecosystems. However, matching these viral genetic sequences to … workflow, then uses a machine-learning model to give its integrated prediction a confidence score. The result is a … used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… to date.  This summer internship program, which began in 2014, pairs undergraduate and graduate students from UC … opportunity to learn valuable professional skills like time management and presentation skills.  “This program is so … I was so impressed with the work everyone has done.” The 2020 JGI-UC Merced interns and mentor/s: Brendan Blasius & …
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Jasmyn Pangilinan
… Jasmyn provides bioinformatics tools and analysis support for user science, with a focus on metagenomes. Passionate about automation and collaboration, …
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Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locus
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Common Ancestry and Novel Genetic Traits of Francisella novicida-Like Isolates from North America and Australia as Revealed by Comparative Genomic Analyses
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