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Expanding Virophage Diversity
… DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with … available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which … Virus)—for the virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, …
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MGM Workshop at Fisabio Summer School
… June 24-28: Module 2/Microbial Genomics & Metagenomics Workshop The workshop is addressed to students and professionals of biology, biomedical … fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the …
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JGI Announces 2023 Community Science Program Awardees
… Congratulations to the proposers of the 19 proposals selected for the 2023 … User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). “We’re very excited to start working … recipients on our Twitter. Samples were collected from across a permafrost age gradient from the Fox permafrost …
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Better Genome Editing for Bioenergy
… team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a … Science team synthesized these sgRNAs, cloning them alongside CRISPR-Cas9 into an expression vector to create an …
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JGI announces 2024 New Investigator portfolio
… The JGI is eager to work and share our tools with a widening circle of … of desert grasslands to the metabolic savviness of microbial ecosystems at the forest floor and along ocean shores. Their results could bring key insights …
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A Shrubbier Version of Rubber
… at producing latex that becomes rubber, but it’s vulnerable to disease and climate shifts. So researchers are looking into a desert shrub that’s native to North America: guayule.  This episode was made in …
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JGI@25: Studying Sorghum’s Survival Skills
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … Bioenergy Research Center) and his team set out to compare different varieties of sorghum. Initially, the project looks …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. … level — really understand how those two cell types [of two different organisms] are interacting with each other, …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … for community sequencing projects and heads R&D efforts to expand the metabolomics capabilities and product … mass spectrometry research products such as stable isotope probing (SIP) to assess metabolite turnover, DNA-SIP …
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Tracking the Origins of Methane-Producing Microbes
… Methane Metabolism. Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over … recent studies now suggest the gene cluster predates this microbial group. Recently published in the Proceedings of … led us to conclude that our new methanogen did not belong to the Euryarchaeota, the archaeal “superphylum” where …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… Congratulations to Susannah Tringe , one of eight scientists and engineers … was recognized for “advances in sequence-based studies of microbial assemblies, revealing the roles of microbial communities in carbon cycling, in interactions …
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Kjiersten Fagnan
… computing consultant, after completing a petascale postdoctoral fellowship at NERSC and LBNL’s Computational Research … methods for reacting subsurface flows, and evolved into scalable methods for scientific data analysis. In 2014 … Engagement Lead with a focus on adapting JGI workloads to run on supercomputing hardware and worked closely with …
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