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… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … This resource also helps in performing cross-species comparative transcriptomics. *The HudsonAlpha Genome … sets, such as sorghum internode time course data from 4 different genotypes by Dr. John Mullet; Dr. Tom Juenger …

… ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is central to our ability to offer host-engineering for our users,” says JGI Director … has already demonstrated CRAGE as a versatile engineering system that allows scientists to conduct genome-wide screens …

… With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of ecosystems. However, matching these viral genetic sequences to … workflow, then uses a machine-learning model to give its integrated prediction a confidence score. The result is a …

… and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental … how KBase (www.kbase.us) can support biological data analysis. It is a free, open source analytics platform … the 500-gigabase cap and that you don’t request outside of the sample range that’s listed. Q: What are the pros and …

… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is … DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National … Area are also co-located in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint Genome …

… Mateus’s research is focusing on the identification and analysis of Mobile Genetic Elements from Metagenomic Data.  Mateus’s …

… Populations of Antarctic lake microbial communities change with the … with light availability. A long-running time-series study offers a first glimpse into a full season’s cycle of this … nutrient cycling that evolved separately from other similar systems, and offers new clues into a unique environment in …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a … in common with certain other cereal crops: It performs C4 photosynthesis, which is the fastest way for plants to … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …

… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage …

… collaborators. This work combines custom flow cytometric analysis, cell sorting, genome amplification, PCR screening, … novel flow cytometry protocols for targeted recovery of specific microbes. …

… from their summer experiences at the JGI Berkeley Lab offers a variety of programs to help inspire and train the … this. Although my interest was always laid in sort of, in analysis. So sort of more computational generally. But yeah, … like a lot of fields would like to have more data science integrated into them, especially with, like, this rise of, …

… Describing the largest analysis to date of the modified DNA base 5mC variations in … themselves can also be modified. The best-known example of a modified DNA base is a methylation of the base cytosine … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …