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CSP Functional Genomics
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Natural Prodcast Episode 17: Cassandra Quave
… culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … that is often done, where we’re really just looking at DNA sequences, and we don’t always know necessarily or pay … methicillin-resistant Staphylococcus aureus . Can you share why finding treatments for these microbes is so important? …
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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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JGIota: The Algae Nicknamed ‘Chlamy’
UC Berkeley plant biologist Sabeeha Merchant explains why she works on this alga, how researchers managed to sequence its genome, and what it has to teach us about other …
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CSP Large Scale Call
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User Executive Committee Charter
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
The Sequence to Function: Applications and Analysis for the …
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Accelerating Metagenomics Discoveries with Deep Learning
… of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural similarities in proteins that low sequence identity may belie. The technology he’s using is … Deep learning algorithms can vectorize faces… … so, why not proteins?         … The U.S. Department of Energy …
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Marine Microbe Contains Multitudes
… of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … ecotypes because, historically, they have used the sequence of a “marker gene,” namely the 16S ribosomal RNA … bioinformatics tools designed for analysis of DNA and RNA sequence data.  … Datasets … BBTools …
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Jeremy Schmutz
Bennetzen, JL & Schmutz, J et al. 2012. Reference genome sequence of the model plant Setaria. Nature Biotechnology … Nature 2010;463:763-8. Schmutz, J et al. 2010. Genome sequence of the palaeopolyploid soybean. Nature 4637278: 178-183. … Thomson Reuters Highly …
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Partnerships Development Team
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JGI@25: Building a Better Bean
… through nitrogen-fixation and holds clues for maximizing soybean, the common bean’s close relative, as a biofuel. To … of the JGI; and Scott Jackson of the University of Georgia sequenced and analyzed the genome of the common bean. That … farmers and a commercial crop for large producers. The team sequenced and assembled a 473-million basepair genome of the …
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