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Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  … tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination …

JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … code, or genome, which underlies physical features and functions. Making connections between the structures and …

…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users … need help translating genomic information into biological function. Through our CSP Functional Genomics call , we look …

Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach to … (IMG/M) database, they successfully crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now … the process hinges on referencing to existing genome sequences.  Some of these proteins are what the scientists …

Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … Group. Many of these bacterial and archaeal genome sequences have been generated using techniques that the JGI … with nearly 5,000 publicly available ones and 1,100 metagenome-assembled genomes (MAGs) reconstructed from …

…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from reseachers who translate genomic information into biological function. Through our CSP Functional Genomics call , we look …

… genomic biodiversity. Using publicly available genome sequence data generated over the past three decades, their … said co-first author Dongying Wu, a member of the Functional Annotation team within the JGI’s Microbiome Data … genes on nearly 2 million genomes, including isolates, metagenome-assembled genomes (MAGs) with varying quality …

… initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead … the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals … mission relevance , proposed data usage by the applicant/community, and track record of the applicant.  Learn about …

See below for a list of Frequently Asked Questions about our proposal submission … for advice!      … The deliverables can range from raw sequence data to well-annotated assembled genomes to … the JGI? … If I have ongoing research funding to carry out functional studies using the proposed sequencing data, …

… uncovering microbial novelties to deciphering metabolic and functional capabilities. Overview of Symposium Goals Metagenomic and single-cell sequence data have provided a means to access novel … Schulz,  New Lineages of Life Lead Emiley Eloe-Fadrosh, Metagenome Program Tanja Woyke, Microbial Program Robert …