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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… the visit of an esteemed interdisciplinary delegation from the University of Duisburg-Essen (UDE), Germany with … be measured by IR-spectroscopy and mass spectrometry in sequence in real time at an atomic resolution. We are … jointly expanding into new areas of research. The extensive algae collection at University of Duisburg-Essen is of …
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Genomic characterization of carbapenem-resistant Shewanella algae isolated from Asian hard clam (Meretrix lusoria)
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Metabolomics
JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and environmental samples using … molecular profiles are generated for metabolites extracted from a variety of experimental samples, including organisms … more about our submission guidelines, what you can expect from your results as well as our library standards. … …
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High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India
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JGI Workshops at PAG
Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics technologies, keen … the length and breadth of algal diversity, the numbers of sequenced algal genomes, and the quality of those genomes, … at the JGI and KBase toward integrative biology and hear from researchers who are applying genomic sequence …
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Programs & Platform Leads
Metabolites, and DNA Synthesis Science Programs and draw from the infrastructure of Genomic Technologies and Data …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … data sets of RNA sequences (metatranscriptomes) generated from diverse environmental samples around the world, … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for …
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Single Cell Research Group
… such effort is targeted at environmental cells that are from candidate phyla, major branches in the phylogenetic … is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which … J. Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.” Nat Biotechnol 36(4): …
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Fungal Friends or Foes in Plant Roots
… fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified … a mycobiome culture collection consisting of fungal species from natural Arabidopsis populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the …
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Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters
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Membrane Bioreactor Pretreatment of High-Salinity O&G Produced Water
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Igor Grigoriev
… led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the JGI Fungal … origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes.  Science.  2012;336: 1715-1719. … and lignocellulose degradation encoded in the genome sequence of  Schizophyllum commune . Nat Biotech.  2010; 28: …
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