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RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics
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Introducing New Members of the JGI User Executive Committee
Pawlowska, who studies fungal-bacterial symbiotic systems, noted that she would like to help advance JGI efforts … in promoting diversity, equity and inclusion (DEI) in STEM disciplines to address JGI research priorities.” U’Ren, … representing a breadth of institutions, research topics and career stages. The election period concluded on December 23, …
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FICUS-NERSC/KBASE
… performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological …
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Micro-Scale Applications Group
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The JGI Data Portal: Improving User Experience
… in the JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the … on IMG and GOLD,” said Steve Wilson, head of the JGI’s Systems Engineering Group. “Our team’s ultimate goal is to … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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SIPs with Standards
The JGI offers SIP analysis to make these experiments accessible to more researchers. Ultimately, the goal is to …
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Natural Prodcast Episode 2: The Primer, Part 2
ALISON: It sounds like it’s kind of like our endocrine system or hormones in a way too. Like in a maybe analogous … all here together. ALISON: How beautiful. What a great partnership.  DAN: Yeah, I guess so. You know, it’s also … recognize that this weird, fatty acid synthase kind of system, like, maybe this bacteria just makes fatty acids in a …
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Publication Policy
… of publications and allowing connections between all systems to maximize the impact of user research. The crucial …
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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots across Brachypodium distachyon Accessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments  
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Natural Prodcast Episode 13: Francisco Barona Goméz
… for a long time about the evolution and natural products systems. This conversation came about because he challenged me … about this, he’s very interested in very highly coevolved systems where a microbe becomes a symbiont, for example, of an … strong interactions and the host or even in tripartite systems. So, in those cases, it’s been, in the last five …
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JGI Portals
… their associated metadata, around the world. … The IMG/M system serves as a community resource for comparative analysis … of reference isolate genomes included from the IMG/M system. … IMG/PR is a plasmid genome resource featuring the … potential, antibiotic resistance genes, and ecosystem information. … The IMG/VR database offers the largest …
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