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User Support Analysis Group
The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, … Our group also performs ‘proof-of principle’ research projects to demonstrate new genomic capabilities. Our group …
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Frequently Asked Questions: Proposal Submission
See below for a list of Frequently Asked Questions about our proposal submission process. You can review … ; click on the call link to see specific details including project types supported, sample/capacity limits, and … should indicate this in the proposal so we can select the project provisionally. If your project makes it successfully …
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Plant Program
With collaborative user projects, the JGI’s Plant Program delves into the natural … challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and … gene function research. The  Open Green Genomes (OGG) project seeks to develop comparative high quality genomes …
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User Programs
Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status CLOSED CLOSED ONGOING ONGOING Who Should Apply? Investigators with research projects that integrate the expertise and capabilities of … user facilities Investigators with DOE mission-relevant projects that call for expansive sequencing, synthetic …
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David Goodstein
With a background in experimental and computational surface physics, Dr. Goodstein held positions at … in support of JGI’s contributions to the Human Genome Project, he began developing larger comparative genomic … NY … RJ Craig et al., 2023.The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type …
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Examples: Successful LOIs & Submissions
Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared …
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Scientific Advisory Committee
The Scientific Advisory Committee (SAC) is a board convened by the JGI Director to provide a scientific and … SAC is chartered to render advice, guidance, and counsel on the effective management and strategic objectives of the … from the CSP Proposal Study Panel on prioritization of CSP projects and, with concurrence from the DOE Office of …
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An Integrated Dataset to Understand Ecosystem Interaction
… tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. … (LANL), and DE-AC05-76RL01830 (PNNL). … BioScales project on JGI Genomes Online Database … BioScales project on National Microbiome Data Collective … …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The … anything. The collaborative consortium behind the GROWdb project demonstrates not only how researchers can … … Cataloging the Microbiome of U.S. Rivers … GROWdb pilot project … GROWdb public narrative … From our partners … From …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … the fungal Tree of Life, including the 1000 Fungal Genomes Project, which aims to provide a reference genome for each …
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Tanja Woyke Elected to American Academy of Microbiology
Congratulations to the JGI’s Tanja Woyke , who has been elected to the American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from … the AAM Fellows in this cohort. Go here for the full AAM news release. Woyke is also one of the organizers for the …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… other forms of  Chloroflexota that adapted to marine environments hundreds of millions of years ago.  The Impact … was done under Contract DE-AC52-07NA2734. Funding for this project was provided by the U.S. National Science Foundation … China (No. 92251302, 91951205, and 31970122). Part of this project was supported by a Natural Sciences and Engineering …
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