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SIPs with Standards
… the goal is to generate SIP data that can be useful to multiple teams and analyses. This episode, Rex Malmstrom (JGI), …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The … in the continental United States. They also provided multiple access points to the information. The team harnessed a … anything. The collaborative consortium behind the GROWdb project demonstrates not only how researchers can …
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Logos and Templates
… The JGI Style Guide offers tips on JGI logo usage - please follow these guidelines. Logos JGI logo – stacked JGI logo – horizontal JGI logo – indicia (no text below) JGI Logo – helix …
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Natural Prodcast Episode 9: Roger Linington
… back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser … and doing medicinal chemistry, doing development of projects on a project-by-project basis. And the more time has gone on, the … This episode features our conversation with Roger Linington , from Simon Fraser …
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Natural Prodcast Episode 4: Nancy Keller
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Welcome back to Natural Prodcast! … so, so cheap to sequence. Right now, for our particular projects, we’re not doing that right now, but we might. I …   DAN: Sure. I know it’s early on, but you do have a project with the JGI. It’s doing some some fungal genome …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into the natural … challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting to environmental changes. The program lays the groundwork for …
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Natural Prodcast Episode 6: Marc Chevrette
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi again, and welcome to Episode 6 … among lots of other things, he works on the Tiny Earth project, which you’ll hear him describe. [ Go here to learn more about Tiny Earth and the JGI’s role in the project by watching Amanda Hurley’s presentation from the …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … the fungal Tree of Life, including the 1000 Fungal Genomes Project, which aims to provide a reference genome for each …
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Natural Prodcast Episode 14: Nigel Mouncey
… DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . … And a little after that acquisition, I moved to another project. This time on vitamin C with a Gluconibacter .  And … sure.  NIGEL MOUNCEY: So we had two major natural products projects that we had in my group which was bioengineering …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. … we also worked in DIANs. We worked on that. We had separate projects with John Thorson and Ben Shen. [Listen here to Ben … metabolome into well plates. And we can use our fancy multiplexed activity metabolomics method to tell us what’s …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint … of tools that leverage stable isotopes to measure carbon and nutrient flux, and identify microbes assimilating … labeled compounds. During this webinar, EMSL’s Mary Lipton and the JGI’s Rex Malmstrom provided background on the …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg … – referring to the moment when the cluster of seeds at the tip of each branch breaks apart so the seeds can disperse – … JGI group has been wonderful to collaborate with, and this [project] wouldn’t have been possible without their …
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