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Mindfully Moving JGI
… JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab campus. … buildings to a new 4-story building 20 miles away in another city and county began more than three years ago. For … for JGI’s operations). At the JGI, that translated to sorting through the stuff accumulated in offices, labs, …
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Single mutation at a highly conserved region of chloramphenicol acetyltransferase enables isobutyl acetate production directly from cellulose by Clostridium thermocellum at elevated temperatures
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing collaboration is available for … describe a strategy to recover high value products from human waste. They   genetically modified yeast to … separating urine from other waste streams and recovering resources that could be used for products such as agricultural …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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A More Intuitive Phytozome Interface
… as an interactive website. Since May 2019, v12 has not had any additional genomes added to it, nor had any … BioMart data warehouse interfaces they have come to rely on from Phytozome, with a more intuitive interface, deployed on much more maintainable software and hardware infrastructure. Phytozome v13 has been …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… Biology article highlights how one microalga collected from water on the ice surface handles such fluctuations. P. … and melt pools, and within the water column. They are also the primary producers in the marine food web, forming the … the changing salinity of the environment. ( The annotated algal genome is available on the JGI’s PhycoCosm …
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Description of Alicyclobacillus montanus sp. nov., a mixotrophic bacterium isolated from acidic hot springs
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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JGI@25: The Little Alga That Could
… 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … sort of genomic hackathon to annotate a genome. (Hear more from on Chlamy from Sabeeha Merchant in this episode of … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference …
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A restricted spectrum of NRAS mutations causes Noonan syndrome
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The Surprising Structure of a Shrub Willow Sex Chromosome
… architecture that is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. … in mammals: a structure that helps correct deleterious mutations. The Impact Shrub willow and its close relative  … the study’s international team, which included scientists from Oak Ridge National Laboratory and the U.S. Department …
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Building Wet and Dry Lab Skills
… and Zyiah Mikes worked with mentors Yi Zhai and John Vogel from the Plant Functional Genomics Group to study … however, there was a new aspect to the project - they also worked with Sharon Greenblum from the User Support … operated by the JGI and Berkeley Lab – to launch a jupyter notebook running R so they could do their data analyses.  …
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