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Enabling pan-repository reanalysis for big data science of public metabolomics data
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core values, which guide the relationships we nurture in our … and the annual meeting. The UEC also acts as a liaison to the user community and the broader scientific community, …
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MGM Workshop at Fisabio Summer School 2025
… Register here The workshop is addressed to students and … related fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the …
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A User-Centered Approach to Accessing JGI Data
… year, it was only accessible through the plant portal  Phytozome . Now the portal offers a way for users to more … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. … use of our search API. They have expressed an interest in using this to find files based on file metadata criteria. …
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MGM Workshop at Fisabio Summer School 2026
… Register here for the workshop The MGM Workshop is Module 4 of the Fisabio Summer School.  The workshop is addressed to students and professionals of biology, biomedical … related fields who are interested in learning and sharing concepts, tools and research results in genomics, …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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JGIota: The Algae Nicknamed ‘Chlamy’
… This shorter episode is about a tiny, single-celled alga – Chlamydomonas reinhardtii – that’s managed to have a big impact. UC Berkeley plant biologist Sabeeha … managed to sequence its genome, and what it has to teach us about other organisms – like plants. [ Editor’s …
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Viral Genomics Group
… Microbes drive critical ecosystem functions and affect global … our collective understanding of ecological and evolutionary parameters driving virus:host dynamics in … and host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of … in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, … metabolites in living systems, particularly as they relate to DOE missions in the bioeconomy, sustainability, and …
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JGI Advisory Committees Code of Conduct
… Guiding Principles All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core values , which guide the relationships we nurture in our …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 will become the … users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse interfaces they have come …
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