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A User-Centered Approach to Accessing JGI Data
… requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of Science is …
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Who We Are
… access to large-scale datasets and analysis tools for genomes, metagenomes, and metabolomics through its data portals. … created in 1997 to unite the expertise and resources in DNA sequencing, informatics, and technology development … accomplishment, the JGI went on to advance basic science by sequencing scores of microbial species as well as several …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … with DOE mission-relevant projects that call for expansive sequencing, synthetic biology, and metabolomics capabilities … Letters of Intent. Proposals may include synthetic biology, sequencing, and metabolomics. Proposals may include …
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Genome biology of the paleotetraploid perennial biomass crop Miscanthus
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Events
… Viral EcoGenomics & Applications (VEGA)  …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, for … environmental samples. Even traditional cultivation approaches applied to relatively tractable samples like … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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User Support Analysis Group
… development of automated analysis pipelines for standard sequencing products performed at scale. Our group also …
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Seasonal activities of the phyllosphere microbiome of perennial crops
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Natural Prodcast Episode 18: A CSP Primer
… Science program. It used to actually stand for Community Sequencing Program. Also CSP, same acronym. But as JGI, as a … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. So … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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Natural Prodcast Episode 9: Roger Linington
… orthogonal perspectives. And sometimes one of those approaches would work more, would be more successful, and … operate, and how analytes are produced, right through to applications and how you use that information in the most … us, we want to hear from you! We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … and mentor is what we strive for,” Visel said. Practical Applications for Fungi Wint began working on the project … build proteins. What Wint and her mentors discovered in the genomes helped to reinforce Charles Darwin’s “survival of …
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The Case for Conservation
… sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science The fire moss Ceratodon purpureus … The genome assemblies highlight the multiple advances in sequencing technologies applied to the effort. The Impact … heavy metal contamination, and drought. The moss genomes’ metabolic pathways could lead to the discovery of …
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