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CSP Large Scale Call
… biology, modeling and biodesign — questions of relevance to DOE’s Biological and Environmental Research (BER) program … any aspect of these mission areas, priority will be given to projects that address the areas of special emphasis that … for scientific merit, DOE mission relevance, proposed data usage by the applicant/community, and track record of …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The Science The  Metagenome … — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been developed to help … Neighbor (KNN) Classification. LDA is a supervised data compression technique that was used to take the …
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Community Science Program
… provides the scientific community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the DOE aims to advance genome science-based scientific research from a …
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between … poplar trees and their microbial partners. The Science To help better understand how ecosystems work and how … natural forests and plantations managed through human intervention. By leveraging metagenomics, scientists …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly … genomes. The team first applied the workflow to a curated reference set of over 300 genomes spanning the fungal …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  Phytozome . Now the portal offers a way for users to more … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Do you accept … While are still working on finalizing the tree and related publication the tree is still in development and not …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges.   The Human Genome Project began in 1990 when the U.S. Department … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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Structure, function and diversity of the healthy human microbiome
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Natural Prodcast
… metabolites, and specialized metabolites all refer to the chemicals that make species unique and different from one another. They are incredibly important to medicine, the environment, and human health. As the JGI acts on its goals in — and builds …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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Len Pennacchio
… has focused on applying state-of-the-art molecular methods to address wide-ranging questions existing in biology. He … where he uncovered the genetic cause of a rare form of human epilepsy and subsequently generated one of the first … he identified a novel apolipoprotein (ApoA5) involved in human and mouse triglyceride metabolism. He is funded by DOE …
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