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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute … resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the gene … aimed specifically at “Gene function” and “Functional genomics.” We will keep updating the Gene Atlas with curated …
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Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus
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Better Crops With a Pointillist Approach to Plant Genomics
In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and more. And …
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Natural Prodcast Episode 4: Nancy Keller
… hear which we recorded at the Society for Industrial Microbiology’s Natural Products conference, which took place a … ag[riculture] and I really liked – I became interested in plant disease in part because of what happened in my Peace … or natural product called T-toxin. And this kills corn plants. So I became very interested in toxins – phytotoxins …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , … the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly known as liverwort, … plant lineages makes it ideal for comparative genomics studies, offering insight into genes critical for …
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Ancient Algae Reveal Secrets of Plant Evolution
Research uncovers the genetic foundations that helped plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , scientists have enhanced our understanding of how early plants transitioned from water to land. Key gene groups …
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Igor Grigoriev
… protists to plants. In 2009, he launched the JGI Fungal Genomics program which resulted in over 2500 fungal genomes … (2018) Leveraging single-cell genomics to expand the fungal tree of life.  Nature Microbiol. 3(12):1417-1428. Haitjema … … Fungal & Algal Science Program … Education … Selected Publications … Awards and Service …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… we’ll hear from Karolina Heyduk, an evolutionary plant biologist at the University of Hawai’i at Mānoa. I … on a group of plants called yuccas. If you know Joshua Tree, that’s an example of a yucca species. And the cool … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Dan Rokhsar
… 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards … in the sequencing and evolutionary analysis of over fifty plant and animal genomes. He currently leads the JGI’s … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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A One-Stop Shop for Analyzing Algal Genomes
… sequence and understand. A team of researchers led by Algal Genomics Program lead Igor Grigoriev and data scientist Alan … useful for scientific inquiry: it shows a full phylogenetic tree of more than 100 sequenced algal genomes — many … analysis of fungal genomes, and Phytozome for comparing plant genomes. Kuo and Grigoriev encourage scientists to …
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A new view of the tree of life
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Sequencing the fungal tree of life
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