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Natural Prodcast Episode 2: The Primer, Part 2
… and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, archaea, they all have secondary … We’ll talk about that when we talk about molecular biology.  But um, yeah, so secondary metabolism is …
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Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus
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A robust gene-stacking method utilizing yeast assembly for plant synthetic biology
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes … worked with 10 species ranging from grasses to broccoli and trees like poplar, spanning about 150 million years of … are recruited to help plants survive environmental stress.  Unlocking the Future of Genome-Enabled Discovery All data …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with … said John Vogel, head of the Plant Functional Genomics program at the JGI and a senior author on the … Berkeley; Gregor Mendel Institute of Molecular Plant Biology (Austria); Leibniz Institute of Plant Genetics and …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies of energy … before this study. A statistical comparison of evolutionary trees built from mitochondrial and nuclear genomes showed …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute … resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the gene … aimed specifically at “Gene function” and “Functional genomics.” We will keep updating the Gene Atlas with curated …
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Natural Prodcast Episode 4: Nancy Keller
… hear which we recorded at the Society for Industrial Microbiology’s Natural Products conference, which took place a … ag[riculture] and I really liked – I became interested in plant disease in part because of what happened in my Peace … or natural product called T-toxin. And this kills corn plants. So I became very interested in toxins – phytotoxins …
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and more. And …
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Igor Grigoriev
… Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of California, Berkeley. He … protists to plants. In 2009, he launched the JGI Fungal Genomics program which resulted in over 2500 fungal genomes … Russia Postdoctoral training in computational structural genomics, University of California, Berkeley, CA …
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Programs & Platform Leads
… drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, …
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Ancient Algae Reveal Secrets of Plant Evolution
… Research uncovers the genetic foundations that helped plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , scientists have enhanced our understanding of how early plants transitioned from water to land. Key gene groups …
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