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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity hotspots … technologies have led to an abundance of microbial genomes becoming available to the global research … study, added co-first author Rekha Seshadri, is a wake-up call to revive the art of hands-on microbiology and …
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Integrating Experimentation with Data
…   Join the Joint Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory (EMSL) for “Empowering Automated Laboratories: Integrating Experimentation with Data.” The event will take place at the Seattle Marriott …
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The JGI announces 2024 awardees for our Community Science Program annual call
JGI is excited to announce the fifteen scientists selected for our 2024 Community Science Program Annual Call. “It’s exciting to see the diverse portfolio of … their outcomes.” The annual CSP call is focused on large-scale genomic science projects relevant to the DOE’s Office …
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — … on Phytozome  … Filling in the Plant Tree of Life … Fungal Dataset … Plant Datasets … Genome Insider …
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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … (Berkeley Lab), has developed a command-line tool called CheckV that can automatically do both. The work was …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Proposals aim to sequence and annotate genomes from Antarctica to Africa to global oceans. Through … (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted from 70 full submissions … accepted through JGI’s calls. Nearly 200 Terabases of data are expected to be generated for the accepted …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… little bit of your background because you do-- you're classically trained as a synthetic chemist. BETSY PARKINSON: Yes. … exposure to working with Streptomyces, learning more about genome mining, as well as isolation and a little bit of … them are actinobacteria. And so we get a lot of them from databases of organisms, so things like the NRL database - or …
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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Synthesis
The Joint Genome Institute's DNA Synthesis Platform capabilities support researchers exploring how to … Synthetic Biology Informatics Group : a team that develops data science tools for workflow management and novel …
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership … draw from the infrastructure of Genomic Technologies and Data Science & Informatics. The JGI also sustains a vibrant community …
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Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale
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A Community Resource for Secondary Metabolite Researchers
… more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … over 1.3 million publicly available bacterial and archaeal genome and contig sources.  The Impact Secondary metabolites … the most comprehensive BGC database available at 10X the scale of the closest comparable database, and has the …
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