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Advances on genomics, biology, ecology and evolution of Brachypodium, a bridging model grass system for cereals and biofuel grasses
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing … ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating … who led the research team and is the head of the Viral Genomics group at the JGI, thinks that if you’re a virus or …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … , which can have pronounced ecological and evolutionary consequences. A previous study conducted by our research team surveying the genomic and phenotypic diversity across the natural range of …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest time, … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Genomics of Aerobic Cellulose Utilization Systems in Actinobacteria
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures … the need for a more comprehensive exploration of genomic DNA modifications (epigenome).  In  Nature Ecology & …
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Help from Citrus’ Bitter, Hardier Cousin
The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Operating Expenses
FY2023 Spending Profile The JGI is funded primarily by the DOE Office of Biological and Environmental Research (BER), a program …
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User Programs
… and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user … FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status CLOSED CLOSED ONGOING ONGOING Who Should … with the JGI Investigators interested in translating genomic information to biological function Details Proposals …
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