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… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a …

… Outreach at JGI takes many forms: We offer internship opportunities … working directly with specific universities, continuing education programs in the Bay Area, and established programs … UC Merced have had a long-standing internship partnership that started in the summer of 2014. …

… Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that … CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, … For further details, please reach out to the Group Lead …

… Programs offer support to users and their research efforts.  JGI scientists lend their expertise to enhance the … develop cutting-edge approaches for and with users, and create computational tools and resources for them. Their concerted efforts help …

… By leveraging new tools and large-scale data mining, JGI researchers nearly … fungal mitochondrial genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science … evolutionary processes. The team then extended their analysis beyond the reference set, using two additional …

… a team of researchers has been working on improving methods for isolating and characterizing entire microbial genomes … by the Banfield lab in collaboration with the JGI), human microbiomes, natural oil seeps in Santa Barbara, Calif., and … from complex metagenomes than any of the single binning tools alone,” primarily because of its capacity to harness …

… Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became … Dr. Kyrpides led the development of the genome analysis and Bioinformatics core at Integrated Genomics Inc. in Chicago, … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar …

… virus sequences vary widely. In a previous effort, an international consortium recommended specific … functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps researchers to … to this point, there has been a lack of fast and accurate tools for researchers to assess the quality of …

… roots with genomes from other plant-associated fungi. Their analysis identified fungal gene families that help determine … health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. … can enable studies of plant root microbiome and other microbiomes by providing reference genomes of the key …

… Genomes & Microbiomes (IMG/M) portal for their sample analysis.  The class had to sift through over 55 billion … many statistical tests for raw data and how to use some bioinformatics tools for analysis to help them focus on what … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …

… row]: John Sedbrook, Viktoria Steck, Ning Sun, Olena Vatamaniuk, Setsuko Wakao, Meng Wang, and Allison Werner.   A … Genome Institute (JGI) and the Molecular Foundry (TMF) for their collaborative user program. The portfolio of … The Joint Genome Institute and Molecular Foundry are DOE Office of Science user facilities. They provide …