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Gamete expression of TALE class HD genes activates the diploid sporophyte program in Marchantia polymorpha
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Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.)
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Intrinsic and Extrinsic Programming of Product Chain Length and Release Mode in Fungal Collaborating Iterative Polyketide Synthases
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David Goodstein
… to the Human Genome Project, he began developing larger comparative genomic systems as the JGI’s eukaryote research … software engineers, Dr. Goodstein currently leads the Plant Comparative Analysis group, and is responsible for genome … in Physics, Cornell University, NY … RJ Craig et al., 2023.The Chlamydomonas Genome Project, version 6: Reference …
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Dan Rokhsar
Program (2010-2019), and JGI Chief Informatics Officer (2013-2016). Dr. Rokhsar joined the faculty of University of … genome analysis, sequence-based genetic methods, and comparative developmental biology. In addition to this …
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Natural Prodcast Episode 10: A Primer on Genome Mining
Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed in … bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from there, … let us know. Find out more at https://jgi.doe.gov/user-programs . Thanks, and see you next time. … Episode …
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JGI Portals
… … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly … provides data access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and genome-centric analyses of fungi and …
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Nikos Kyrpides
… lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and … group is developing novel methods for enabling large-scale comparative analysis, as well as mining and visualization of … University of Crete, Greece … Pavlopoulos GA et al. (2023) Unraveling the functional dark matter through global …
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JGI announces 2023 CSP Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research … Below find a list of the six researchers accepted for 2023. Proposals are accepted year-round; the next deadline is Jan. 29, 2024.  …
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Data Policy
… systems or outside repositories. Full access is granted to proposal PIs, Co-PIs, and collaborators of any given proposal. Third parties (often referred to as “data users”) … repositories),  (2) PI request to list data publicly, (3) at the end of the embargo period. If data or analyses of …
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Natural Prodcast Episode 4: Nancy Keller
… the primer podcasts ( part 1 here , part 2 here , and part 3 here ), which you should be able to find earlier in the … on microbiomes they only talk about the bacteria. My god! 30% of our gut microbes are fungi. It’s really frustrating … collaborate, let us know! Find out more at jgi.doe.gov/user-programs .   Thanks, and see you next time!  … Episode …
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Natural Prodcast Episode 22: Alison Narayan
… run things in like little Eppendorf tubes, or in 96, or 384 well plates. But then the fun really starts when you’re … I look at this, and it’s like, it was amazing. You could do 3,000 reactions in a day, as long as you have a way to … Tropolone Synthesis”, (preprint)  ChemRxiv.  2023.   doi: 10.26434/chemrxiv-2023-lvngd “Enabling Broader …
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