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User Support
… collaborate with users to develop project requirements, define the scope of work and outline roles and responsibilities resulting in a formal … leads Solicit user feedback about your overall experience working with the JGI. Find out more about our Project …
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his … analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the JGI Fungal Genomics program … Lankiewicz et al (2023) Lignin deconstruction by anaerobic fungi.  Nature Microbiol. 8(4):596-610. Nelson et al (2022) …
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Jeremy Schmutz
Mr. Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when he was working for the Stanford Human Genome Center, now the … development in Setaria viridis and maize. Nature Plants 3:17054. Schmutz, J, & McClean P et al. 2014. A …
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Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written report that is … drove the entire project, Visel explained. She continued working virtually with her JGI mentors for nearly three … what we strive for,” Visel said. Practical Applications for Fungi Wint began working on the project that culminated in …
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Better Crops With a Pointillist Approach to Plant Genomics
In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and more. And …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at … JGI consists of around 280 researchers and support staff in the Integrative Genomics Building in Berkeley, …
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Phylogenomics reveals convergent evolution of red-violet coloration in land plants and the origins of the anthocyanin biosynthetic pathway
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** … 99.8% Q3 2025 175     2,140     Q4 2025 175     2,167     *Includes Illumina and PacBio sequencing platforms. …
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User Programs
For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.   Proposal Call FICUS CSP Large Scale CSP New …
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Genomics of wood-degrading fungi
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Metabolic Modeling of Fungi
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