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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… human genome, an arms race was being waged. In this JGI@25 video, Susan Lucas, former JGI Production Department Head and current ESnet … years. The DOE brought together the people and resources from these three national labs to form the DOE Joint Genome …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… salt — near the surface where algae grow. Armed with a better understanding of the alga’s stress resistance and … manage the growth, yield and climate resilience of algae — for potential use as biomass or in biomass conversion to … Biology article highlights how one microalga collected from water on the ice surface handles such fluctuations. P. …
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Metagenomic analysis of the ET‐743 producer
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… photosynthesizing organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for ‘wanderer’). But they vary …
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Jeremy Schmutz
Genome Institute dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha … For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community … Hossain, J. T., Lovell, J. T.., et al. 2023. JGI plant gene atlas: an updateable transcriptome resource to improve …
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Uncovering Novel Genomes from Earth’s Microbiomes
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications.   … repository of 52,515 microbial draft genomes generated from environmental samples around the world, expanding the … gene clusters (BGCs), increasing these BGCs in  IMG/ABC (Atlas of Biosynthetic Gene Clusters) by 31%. ( Listen to …
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Programs & Platform Leads
… drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, … Metabolites, and DNA Synthesis Science Programs and draw from the infrastructure of Genomic Technologies and Data Science & Informatics. The JGI also sustains a vibrant community …
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Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungi
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Axel Visel
… the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and … a regulator of lipid metabolism in microalgae .  Nature Plants 1: 15107 Lupiáñez DG, Kraft K, Heinrich V, Krawitz P, … (2013, * corresponding author). A high-resolution enhancer atlas of the developing telencephalon. Cell 152, 895-908. …
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Offerings & Capabilities
The central mission of the JGI’s Genomic Technologies department is   … in three overarching categories: Sequencing, Synthesis and Metabolomics. Strong internal collaborations with  Science … and further advancing sequence applications, single cell genomics, DNA synthesis, and metabolomics.   … Deputy …
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High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types
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