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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … on the effective management and strategic objectives of the microbial and metagenome programs. The committee serves as the program's key …
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CSP Large Scale Call
… to unravel functional capabilities of plants, microbes and microbial communities, global carbon and nutrient cycling, …
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Diverse events have transferred genes for edible seaweed digestion from marine to human gut bacteria
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Calculating the Costs of Multiple Switchgrass Gene Copies
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … broad distribution indicate multiple, independent origin events? Do the cytotypes react differently in response to … and adaptation mediated the response of switchgrass to past climate change will provide unprecedented insight into …
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UC Merced Interns Reflect on Their JGI Summer Projects
Over the course of eight weeks this past summer, 10 students from UC Merced worked closely with … remotely due to COVID-19 restrictions, but virtual events and technology enabled a fruitful experience for … and GitHub enabled virtual collaboration. JGI also hosted events to enable students to showcase their work and even a …
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Eelgrass Proves to Be Much Younger Than We Thought
… to assess absolute time estimates for major colonization events. It was previously assumed, due to the wide and … closer to a mere 250,000 years — with many key colonization events in the Atlantic ocean occurring within the last … form of another species, so the scientists had to use the genome itself.   Approximately 67 million years ago, the …
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Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricumtype E strains
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the seasons. The Science … when it comes to nutrient cycling in polar regions. While microbial populations in other Antarctic lakes and the … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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FICUS
… samples of the spatial, temporal, taxonomic (environmental, microbial, plants, invertebrate, and vertebrate), and …
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Accelerating Metagenomics Discoveries with Deep Learning
… their works-in-progress with 86 participants in an online workshop to harness deep learning for metagenomic data.  … biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector … Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew Tritt of CRD and, independently, Ying …
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A Horizontal Gene Transfer Event Defines Two Distinct Groups within Burkholderia pseudomallei That Have Dissimilar Geographic Distributions▿ †
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
As SIP experiments shed more light on microbial communities than ever before — especially with the … proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … JGI users and collaborators gathered for a SIP-focused workshop at the JGI in the fall of 2024. “ We wanted to get …
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