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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … ; click on the call link to see specific details including project types supported, sample/capacity limits, and …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent … of thousands of archaeal and bacterial type strains ( GEBA-type strains project ), the delineation of host-virus …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into the natural … challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting to environmental changes. The program lays the groundwork for …
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Mining Metagenomes for Cas Proteins
… to accurately edit genomes (that is, repair gene mutations, and either delete or add genes in a precise fashion) has applications across many areas. In particular, gene editing is being … The work conducted by the US Department of Energy Joint Genome … the Office of Science of the US Department of Energy under contract no. DE-AC02-05CH11231. The work was supported in …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… For the last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, … at a high level as JGI transitioned from the Human Genome Project to gaining momentum as a national user facility. He … that in retirement, Ray won’t be logging the miles on a daily commute (over 100 roundtrip every day, conservatively …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … the fungal Tree of Life, including the 1000 Fungal Genomes Project, which aims to provide a reference genome for each …
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Promoting the Power of Viral Metagenomics
… early 2020, people all over the world have been forced to confront the awesome power that viruses have to affect nearly every aspect of our daily lives.  But for researchers who study viruses that … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing collaboration is available for licensing. The Science In  Nature … The collaboration between the JGI and the Foundry on this project highlights an  ongoing partnership that combines the … Through a Laboratory-Directed Research and Development project supported by Berkeley Lab, JGI and Foundry …
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Training the Next Generation of Talent
… Office of Science user facility, Keedrian Olmstead was back on campus at the University of California, Merced to start … challenges UC Merced graduate students with individual projects at the DOE JGI that provide hands-on experience in … it’s getting closer to producing trillion base data sets on daily basis.” As part of their learning experience, the …
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User Programs
… Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and Materials Status … CLOSED Who Should Apply? Investigators with research projects that integrate the expertise and capabilities of … user facilities Investigators with DOE mission-relevant projects that call for expansive sequencing, synthetic …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for … ago, the  Genomes OnLine Database has matured from six projects on a spreadsheet into a flagship  genomic metadata … Collaborative ( NMDC ) and the DOE Systems Biology Knowledgebase ( KBase ) — and aims to extend these collaborations …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… other forms of  Chloroflexota that adapted to marine environments hundreds of millions of years ago.  The Impact Chloroflexota are bacteria … special skills to break down pollutants and recycle carbon. They were part of an ancient lineage of bacteria to … was done under Contract DE-AC52-07NA2734. Funding for this project was provided by the U.S. National Science Foundation …
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