Search

… to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world. … databases and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to …

… Program over the past decade in gene regulatory network projects supported by the CSP, and as part of microbiome … of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) project. As a UEC member, he aims to help the JGI … studies (e.g., a functional encyclopedia building on GEBA) and in microbiome engineering.  Köpke is the Chief …

… and multidisciplinary nature of DOE mission science projects, this initiative aims to encourage innovative … and selection processes, making it difficult to propose projects that truly integrated the capabilities of more than … fundamental science experiments in ways they couldn’t with projects undertaken separately at individual user …

… as part of Genomic Encyclopedia of Bacteria and Archaea (GEBA) initiative. “This project has helped to define the current shape of the … including single-cell genomics and metagenomics. The GEBA initiative has also utilized a very large collection of …

… DAN UDWARY: Nothing to be sorry about. Yeah, no, your project was really cool. The vanadium haloperoxidases are some really cool enzymes, and it was fun to see that project take shape. Yeah. JACLYN WINTER: Yeah, that was a … we can put together. What makes it a little bit different beyond that– and sorry, I’m just going to keep babbling …

… BioScales project on JGI Genomes Online Database … BioScales project on National Microbiome Data Collective …

… And so when I came into graduate school, I worked on that project. And it was working exactly that same kind of way, … for fungal BGCs and for plants . As an open source project, you can also download the code and run it on your … getting those things into a tube, and actually, then, even beyond that, having those things do what we were hoping that …

… are also available through the DOE Systems Biology Knowledgebase, allowing researchers to immediately explore and … anything. The collaborative consortium behind the GROWdb project demonstrates not only how researchers can … The work conducted by the DOE Systems Biology Knowledgebase (KBase) is funded by the US DOE, Office of Science, …

… allowed researchers to map regulatory “switches” in species beyond traditional models. Updates to DAP-seq build upon the … work for the kinds of plant samples we study — and even go beyond, putting four different species in there all at once. … robustness will enable researchers to propose multi-genome projects, opening new avenues for comparative regulatory …

… With collaborative user projects, the JGI’s Plant Program delves into the natural … gene function research. The  Open Green Genomes (OGG) project seeks to develop comparative high quality genomes …

… plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. Department of Energy (DOE) … plants.  Pangenomes encompass a plant’s genetic diversity beyond a single reference genome, which is key to … Energy operated under contract no. DE-AC02-05CH11231. This project received funding from the European Research Council …

… data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … the fungal Tree of Life, including the 1000 Fungal Genomes Project, which aims to provide a reference genome for each … genomes were conducted as part of the 1000 Fungal Genomes Project supported by the JGI Community Sequencing Project # …