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… move toward characterizing the human microbiome  by its genomes and metagenome , rather than just by 16S ribosomal …

In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These students analyze the genomes, write reports, and publish first-author papers, … Soghomonian share what it was like to take on one of these genomes.  …

… gene networks. BMC genomics. 20:12. 2019 Anderson et. al., Exploiting algal NADPH oxidase for biophotovoltaic energy. …

… to study genome regulation in human and other vertebrate genomes. When he joined the JGI, he worked as a project … Lab … Bowers et al. 2024. scMicrobe PTA: Near Complete Genomes from Single Bacterial Cells bioRxiv , 2024.01. …

Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, the largest class of fungi, by … to identify data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The …

Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Almost all known virophage genomes share only four genes in common: major and minor …

Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps in the …

… technologies have led to an abundance of microbial genomes becoming available to the global research … a deep dive into over 1.8 million bacterial and archaeal genomes to see how much of their diversity we've actually … Data Science group. “Turns out that despite all the genomes we've sequenced, we've only scratched the surface.” …

… for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of thousands of genetic … Metagenomic discovery of biomass-degrading genes and genomes from cow rumen . Science 331, 463-7. Visel A , Zhu …

… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … and improve the quality of metagenome-assembled viral genomes . The Impact The microbes that play key roles in … DNA sequencing can help scientist to recover the genomes of these viruses and associate them with their …