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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability … data, open to all researchers. Book a session via the appointment calendar for technical help, feedback or a guided …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … efforts to build predictive models for the behaviors and interactions of complex systems.  One of its key innovations … AI models. I hope that the JGI will eventually not only host data, but also host these models — while helping its …
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Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products … a gutless oligochaete for which she deciphered function and host-symbiont interplay using metagenomics. Taking on a … Adjunct Scientist appointment at the Bigelow Laboratory for Ocean Sciences since 2012 and an Adjunct Professor at the …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book … domains every virus carries, and who is their likely host. We’ve made all of that information fully free and … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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A Community Resource for Secondary Metabolite Researchers
… Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most living creatures for energy, growth and reproduction—most … in the recent Database issue of the journal Nucleic Acids Research , the Secondary Metabolism Collaboratory (SMC) has …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is … The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific Subtropical Gyre, microbes tend to … lead author Dominique Boeuf and colleagues set sail on research cruises in 2015 and 2016. At Station ALOHA , site …
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Viruses infecting a warm water picoeukaryote shed light on spatial co-occurrence dynamics of marine viruses and their hosts
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a … diversity and capable of transferring genes from one host microbe to another, which can have a significant impact … the FICUS program to JEM and used resources at the DOE Joint Genome Institute (JGI) and the Environmental Molecular …
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their … water-quality regulation. Focusing on the rhizosphere and interactions between the trees, microbes and soil chemistry … ) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of actinobacteria Streptomyces … of ActinoBase,  a public platform built on the knowledge of researchers studying actinomycetes and the focus of a  … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea vents hold vast potential for bioenergy.   The Science Hydrothermal vents are ocean-floor openings in the Earth’s crust that emit hot, … conditions. At these vents, and underwater volcanoes,  researchers studied microbial communities across five …
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