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… so starting from some of the enzymes that we had the most data on and knew the most about, working with my … off– JACKIE WINTER: No. ALISON NARAYAN: Often, they’re abbreviated too from alpha ketoglutarate to just AKGs. In my … with. DAN UDWARY: Yeah. ALISON NARAYAN: And there are other tools that I think are really useful, that again are set up …

… researchers searching for sequences of RNA viruses in large data sets, their work may be akin to finding a single … this workflow, the team combed through more than 5,000 data sets of RNA sequences (metatranscriptomes) generated … Advances in sequencing technologies and computational tools have uncovered a diversity of viruses that infect not …

… early stage drug discovery in general, and a possible data-driven future for plant natural products. Happy … get a DNA sequence first. And there are plenty of software tools to find natural product gene clusters, and even be … is strange because they’re exposed to the sun. They’re rubbing this all over their body. What’s going on? And so we …

… cells of the uncultivated SAR324. The constellation of data gave the team unprecedented resolution to study the … were also processed using the JGI-developed software suite, BBTools , and relying on the JGI Integrated Microbial Genomes … SAR324 on IMG/M Data portal …

… flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC … hardware and worked closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was … of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head.  Dr. Fagnan is …

… begin, and all CSP proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to … The deliverables can range from raw sequence data to well-annotated assembled genomes to synthesized DNA constructs to metabolomics data, depending on the specific product types covered in the …

… recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). … the virus and plasmid workflows for the National Microbiome Data Collaborative.  This award recognizes distinguished research achievements that support open data practices, development of standards and processes for …

… a postdoc and went to industry to see what they had, what data they had. DAN UDWARY: And they had a lot of data for … forming so that we have things to point out and say, we swabbed this stalactite. We used to swab that gypsum flower, … an undergraduate and not succeeding and still using all the tools from mechanistic enzymology to natural product …