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Jeremy Schmutz
… For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and DOE relevant cellulosic … Institute and the collaborative projects funded through the CSP program. In addition to continuing to develop strategies …
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JGIota: Looking Back at Methane-Making Microbes
… gas: methane. Those emissions mainly come from gut microbes — the bacteria and archaea breaking down plant matter. So since 2010, the JGI has supported …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , … the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly known as liverwort, … into gene families involved in adaptations seen in later plant lineages. The team found that some of the adaptation …
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Tracing the Evolution of Shiitake Mushrooms
… of the genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  … and their evolution could provide strategies for converting plant waste into sugars for  biofuel production. … sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of Energy (DOE) Joint Genome …
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A Plant Root Atlas for Tracking Developmental Trajectories
… the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in diverse plant species beyond models,” he said. Cole annotated cell types in the plant root atlas, and noted that the approach he developed … Plant Single-Cell Solutions for Energy and the Environment …
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At the nexus of three kingdoms: the genome of the mycorrhizal fungus Gigaspora margarita provides insights into plant, endobacterial and fungal interactions
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JGI@25: Fueling Investigation into Methane-Making Microbes
… come from livestock — specifically, from the methane-making microbes within their rumen. There is another climate-minded … reason for studying rumen: Livestock live off plant matter, and their rumen are highly capable of breaking … to understand. A better understanding of rumen and the microbes that live there can drive solutions into stemming …
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Natural Prodcast Episode 8: Eric Schmidt
… the sponges talk to each other? ERIC:   He was looking at interactions between sponges and other organisms. So one of … how these pieces fit together. And if we can design those interactions, I think we’ll be a lot better at rationally … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health and environmental … conifer needle microbiomes. The survey showed what these microbes are equipped to do on the leaf surface. More … including resilience to stress, decomposition, and interactions between forests and the atmosphere. The team …
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Natural Prodcast Episode 12: Nadine Ziemert
… product reports on the evolution of genome mining and microbes with Mohammad Alanjary and Tilmann Weber to be a … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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The International Virus Bioinformatics Meeting 2020
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JGI@25: Using Team Science to Build Communities Around Data
… of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would complement these … along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is to generate … representing all major evolutionary lineages in the land plant tree of life.   As of the start of 2022, there were …
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