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Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert
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Environmental Genomics Group
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Plotting a Model for Virus-Host Warfare Deep Below Ground
DNA sequences that code for CRISPR systems, which help bacteria resist foreign genetic elements by incorporating … they compared samples collected from an aquifer in 2012 and 2018 against a biofilm sample collected in 2018. They looked for and found CRISPR spacer sequences in …
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Kjiersten Fagnan
Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head. In 2018, Dr. Fagnan was part of the Gordon Bell prize winning … Performance Computing, Networking, Storage and Analysis, 2018, pp. 717-730, doi: 10.1109/SC.2018.00060. …
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Metabolomics Program
… biological and environmental samples — including microbes, fungi, plants and soils. Through a combination of … Here, a controlled environment of plant, microbes, fungi, etc may be established and subject to repeatable, …
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JGI Portals
… and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across sequenced … and to conduct comparative and genome-centric analyses of fungi and community annotation. … Phycocosm is a …
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Genomics of wood-degrading fungi
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Metabolic Modeling of Fungi
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JGI@25: Using Team Science to Build Communities Around Data
… 1000 fungal genomes to create two reference genomes for all fungi families — essentially, the foundation for an … of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would complement these … The Open Green Genomes Initiative is the product of a 2018 Community Science Program proposal from James …
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On the origin of bird’s nest fungi: Phylogenomic analyses of fungi in the Nidulariaceae (Agaricales, Basidiomycota)
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High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India
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Lignin deconstruction by anaerobic fungi
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